PCRMs, Predicted cis-Regulatory Modules — home

Functional analysis

Start from a gene or a transcription factor to find the predicted cis-regulatory modules that may regulate it, or the sites where it binds.

Closest CRMs to a gene

Choose a genome

Enter a gene

Use one gene symbol or Ensembl ID.

Set the p-value cutoff

Lower cutoffs return fewer, higher-confidence CRMs.

CRMs around a gene

Choose a genome

Enter a gene

Use one gene symbol or Ensembl ID.

Choose the window
Where
How far
your gene 1 Mb upstream 1 Mb downstream
Upstream and downstream follow the gene’s strand; shown here for a gene on the + strand.

Set the p-value cutoff

Lower cutoffs return fewer, higher-confidence CRMs.

TF binding sites

Choose a genome

Enter a transcription factor

Use one TF symbol, as it appears in the motif annotations.

Pick chromosomes

Human (hg38)

Mouse (mm10)